No lecture slides for this class. We’ll spend the entire time working on scRNA-seq script.
Overview
- Other considerations (no one-size-fits-all for filtering…eg. intestine vs mln, different clustering algos give different results)
- enrichment analysis on scRNAseq
- label transfer (maybe demo with MLN in lecture and then have them transfer labels to Ileum)
- cell cycle regression
- Subclustering
- Pseudobulking
- CellChat - cell/cell communication
Learning objectives
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Code and files
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Lecture videos
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Reading
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