No lecture slides for this class. We’ll spend the entire time working on scRNA-seq script.

Overview

  • Other considerations (no one-size-fits-all for filtering…eg. intestine vs mln, different clustering algos give different results)
  • enrichment analysis on scRNAseq
  • label transfer (maybe demo with MLN in lecture and then have them transfer labels to Ileum)
  • cell cycle regression
  • Subclustering
  • Pseudobulking
  • CellChat - cell/cell communication

Learning objectives

Stay tuned for more info

Code and files

Stay tuneed for more info

Lecture videos

Stay tuned for more info


Reading

Stay tuned for more info